Publications of Ibrahim Avsar Ilik

Ilik, I. A.; Aktas, T.; Maticzka, D.; Backofen, R.; Akhtar, A.: FLASH: ultra-fast protocol to identify RNA-protein interactions in cells. Nucelic Acids Research 48, p. e15 (2020)

Estrada Mallarino, L.; Engel, C.; Ilik, I. A.; Maticzka, D.; Heyl, F.; Müller, B.; Yakulov, T. A.; Dengjel, J.; Backofen, R.; Akhtar, A. et al.; Walz, G.: Nephronophthisis gene products display RNA-binding properties and are recruited to stress granules. Scientific Reports 10, pp. 1 - 14 (2020)

Maticzka, D.; Ilik, I. A.; Aktas, T.; Backofen, R.; Akhtar, A.: uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins. Nature Communications 9, p. 1142 (2018)

Ilik, I. A.; Maticzka, D.; Georgiev, P.; Gutierrez, N. M.; Backofen, R.; Akhtar, A.: A mutually exclusive stem-loop arrangement in roX2 RNA is essential for X-chromosome regulation in Drosophila. Genes and Development 31, pp. 1973 - 1987 (2017)

Aktas, T.; Ilik, I. A.; Maticzka, D.; Bhardwaj, V.; Rodrigues , C. P.; Mittler, G.; Manke, T.; Backofen, R.; Akhtar, A.: DHX9 Suppresses RNA processing defects originating from the Alu invasion of the human genome. Nature 544, pp. 115 - 119 (2017)

Quinn, J. J.; Zhang, Q. C.; Georgiev, P.; Ilik, I. A.; Akhtar, A.; Chang, H. Y.: Rapid evolutionary turnover underlies conserved lncRNA-genome interactions. Genes and Development 30, pp. 191 - 207 (2016)

Quinn, J. J.; Ilik, I. A.; Qu, K.; Georgiev, P.; Chu, C.; Akhtar, A.; Chang, H. Y.: Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification. Nature biotechnology 32, pp. 933 - 940 (2014)

Ilik, I. A.; Quinn, J.; Georgiev, P.; Tavares-Cadete, F.; Maticzka, D.; Toscano, S.; Wan, Y.; Spitale, R. C.; Luscombe, N.; Backofen, R. et al.; Chang, H. Y.; Akhtar, A.: Tandem Stem-Loops in roX RNAs Act Together to Mediate X Chromsome Dosage Compensation in Drosophila. Molecular Cell 51, pp. 156 - 173 (2013)

Conrad, T.; Cavalli, F. M. G.; Holz, H.; Hallacli, E.; Kind, J.; Ilik, I.; Vaquerizas, J. M.; Luscombe, N. M.; Akhtar, A.: The MOF Chromobarrel Domain Controls Genome-wide H4K16 Acetylation and Spreading of the MSL Complex. Developmental Cell 22, pp. 610 - 624 (2012)

Ilik, I.; Akhtar, A.: roX RNAs. RNA Biology 6, pp. 113 - 121 (2009)

Ilik, I. A.: A biochemical study of roX2 interacting proteins. Dissertation, University of Heidelberg, Heidelberg, Germany (2011)